\documentclass[oneside]{book}
\input{FormatoUTP.tex}
\begin{document}
\input{Cap00_Preliminares.tex}
\tableofcontents
\input{Cap01_Introduccion.tex}
\input{Cap02_Metodos.tex}
\input{Cap03_Resultados.tex}
\input{Cap04_Conclusiones.tex}
\appendix
\appendix
\addcontentsline{toc}{chapter}{Apendices}
\input{Cap05_Apendices.tex}
\bibliographystyle{apalike}
\bibliography{bibliografia}
\end{document}