\documentclass[12pt,letterpaper,oneside]{book}
\input{myThesis/header.tex}
\graphicspath{{Figures/}}
\input{myThesis/titlePage}
\makenoidxglossaries
\loadglsentries{myThesis/glossary}
\begin{document}
%\glossaryAcronyms
{\frontmatter
\flyleaf
\disclaimerpage
\titlepageAFIT
\committeepage }
\phantomsection
\input{myThesis/abstract.tex}
\phantomsection %not sure exactly what this does, but it helps with Table of Contents and References
{
\tableofcontents
\glsunsetall % resets all acronyms, so all will be spelled out again
\listoffigures
\listoftables
% UNUSED
%\listofabbreviations
%\listofsymbols
\mainmatter }
\phantomsection
\input{myThesis/chapter1introduction.tex}
\phantomsection
\input{myThesis/chapter2background.tex}
\phantomsection
\input{myThesis/chapter3methodology.tex}
\phantomsection
\input{myThesis/chapter4results.tex}
\phantomsection
\input{myThesis/chapter5conclusion.tex}
\phantomsection
\input{myThesis/appendix.tex}
\phantomsection
\bibliographystyle{unsrt}
%\bibliography{myThesis/myBibliography}
\bibliography{myThesis/library} % POINT TO .bib FILE (e.g. the one updated by Mendeley)
% only references used will be printed in bibliography
\phantomsection
\printnoidxglossary[sort=word,type=acronym]
%\printglossary[type=abbrev]
\backmatter
\input{myThesis/SF298}
\end{document}
